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[ 源代码： mapsembler2  ]

软件包：mapsembler2（2.2.4+dfsg1-4 以及其他的）

mapsembler2 的相关链接

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bioinformatics targeted assembly software

Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters).

It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice.

Mapsembler2 may be used for (not limited to): 

 - Validate an assembled sequence (input as starter), e.g. from a de
   Bruijn graph assembly where read-coherence was not enforced.
 - Checks if a gene (input as starter) has an homolog in a set of reads
 - Checks if a known enzyme is present in a metagenomic NGS read set.
 - Enrich unmappable reads by extending them, possibly making them mappable
 - Checks what happens at the extremities of a contig
 - Remove contaminants or symbiont reads from a read set

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下载 mapsembler2

下载可用于所有硬件架构的
硬件架构 版本 软件包大小 安装后大小 文件
alpha （非官方移植版） 2.2.3+dfsg-1 241.2 kB910.0 kB [文件列表]
amd64 2.2.4+dfsg1-4 707.5 kB1,283.0 kB [文件列表]
arm64 2.2.4+dfsg1-4 685.7 kB1,247.0 kB [文件列表]
hppa （非官方移植版） 2.2.3+dfsg-1 241.5 kB803.0 kB [文件列表]
m68k （非官方移植版） 2.1.6+dfsg-1 262.2 kB453.0 kB [文件列表]
ppc64 （非官方移植版） 2.2.3+dfsg-1 228.6 kB928.0 kB [文件列表]
ppc64el 2.2.4+dfsg1-4 722.5 kB1,571.0 kB [文件列表]
s390x 2.2.4+dfsg1-4 683.2 kB1,307.0 kB [文件列表]
sh4 （非官方移植版） 2.1.6+dfsg-1 285.5 kB469.0 kB [文件列表]
sparc64 （非官方移植版） 2.1.6+dfsg-1 263.1 kB458.0 kB [文件列表]
x32 （非官方移植版） 2.2.3+dfsg-1 233.7 kB706.0 kB [文件列表]