Paket: mapsembler2 (2.2.4+dfsg1-4 ve diğerleri)

mapsembler2 için bağlantılar

Debian Kaynakları:

mapsembler2 Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [colibread.inria.fr]

Benzer paketler:

bioinformatics targeted assembly software

Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters).

It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice.

Mapsembler2 may be used for (not limited to):

 - Validate an assembled sequence (input as starter), e.g. from a de
   Bruijn graph assembly where read-coherence was not enforced.
 - Checks if a gene (input as starter) has an homolog in a set of reads
 - Checks if a known enzyme is present in a metagenomic NGS read set.
 - Enrich unmappable reads by extending them, possibly making them mappable
 - Checks what happens at the extremities of a contig
 - Remove contaminants or symbiont reads from a read set

mapsembler2 ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: bc

GNU bc arbitrary precision calculator language
dep: libc6 (>= 2.11) [hppa]

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

dep: libc6 (>= 2.16) [x32]

dep: libc6 (>= 2.17) [sh4]

dep: libc6 (>= 2.29) [amd64, arm64, ppc64el, s390x]

dep: libc6 (>= 2.4) [m68k, sparc64]

dep: libc6 (>= 2.8) [ppc64]
dep: libc6.1 (>= 2.8) [alpha]

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb
dep: libgcc-s1 (>= 3.0) [amd64, arm64, ppc64el, s390x]

GCC support library
dep: libgcc1 [x32]

Paket mevcut değil

dep: libgcc1 (>= 1:4.1.1) [alpha, ppc64, sparc64]

dep: libgcc1 (>= 1:4.3) [sh4]
dep: libgcc2 (>= 4.2.1) [m68k]

Paket mevcut değil
dep: libgcc4 (>= 4.1.1) [hppa]

Paket mevcut değil
dep: libgomp1 (>= 4.9) [m68k, sh4, sparc64 değil]

GCC OpenMP (GOMP) support library
dep: libhdf5-7 [x32]

Paket mevcut değil
dep: libhdf5-8 [alpha, hppa, ppc64]

Paket mevcut değil
dep: libstdc++6 [x32]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 4.4.0) [m68k, sh4, sparc64]

dep: libstdc++6 (>= 4.8) [hppa]

dep: libstdc++6 (>= 4.9) [alpha, ppc64]

dep: libstdc++6 (>= 5.2) [amd64, arm64, ppc64el, s390x]
dep: zlib1g (>= 1:1.2.3.4)

compression library - runtime

mapsembler2 indir

Tüm mevcut mimariler için indir
Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	2.2.3+dfsg-1	241,2 kB	910,0 kB	[dosya listesi]
amd64	2.2.4+dfsg1-4	707,5 kB	1.283,0 kB	[dosya listesi]
arm64	2.2.4+dfsg1-4	685,7 kB	1.247,0 kB	[dosya listesi]
hppa (resmi olmayan port)	2.2.3+dfsg-1	241,5 kB	803,0 kB	[dosya listesi]
m68k (resmi olmayan port)	2.1.6+dfsg-1	262,2 kB	453,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	2.2.3+dfsg-1	228,6 kB	928,0 kB	[dosya listesi]
ppc64el	2.2.4+dfsg1-4	722,5 kB	1.571,0 kB	[dosya listesi]
s390x	2.2.4+dfsg1-4	683,2 kB	1.307,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	2.1.6+dfsg-1	285,5 kB	469,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	2.1.6+dfsg-1	263,1 kB	458,0 kB	[dosya listesi]
x32 (resmi olmayan port)	2.2.3+dfsg-1	233,7 kB	706,0 kB	[dosya listesi]