Package: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde and others)

Links for ngmlr

Debian Resources:

Download Source Package ngmlr:

Maintainer:

Debian Med Packaging Team (QA Page, Mail Archive)

External Resources:

Homepage [github.com]

Similar packages:

Experimental package

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

CoNvex Gap-cost alignMents for Long Reads

Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.

Other Packages Related to ngmlr

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34) [not alpha, ia64, riscv64, sh4]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.36) [sh4]

dep: libc6 (>= 2.38) [riscv64]
dep: libc6.1 (>= 2.34) [alpha]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.36) [ia64]
dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

GCC support library

dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386, ia64, sh4]
dep: libgcc-s2 (>= 4.2.1) [m68k]

GCC support library
dep: libssw0 (>= 1.1)

fast SIMD parallelized implementation of the Smith-Waterman algorithm
dep: libstdc++6 (>= 11) [not riscv64]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 13.1) [riscv64]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

Download ngmlr

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	674.0 kB	1,303.0 kB	[list of files]
amd64	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	673.6 kB	1,157.0 kB	[list of files]
arm64	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	653.2 kB	1,173.0 kB	[list of files]
armel	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	648.4 kB	1,112.0 kB	[list of files]
armhf	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	649.1 kB	1,008.0 kB	[list of files]
i386	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	680.5 kB	1,184.0 kB	[list of files]
ia64 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	721.5 kB	1,631.0 kB	[list of files]
m68k (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	664.0 kB	1,180.0 kB	[list of files]
mips64el	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	657.1 kB	1,260.0 kB	[list of files]
ppc64 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	677.1 kB	1,301.0 kB	[list of files]
ppc64el	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	677.3 kB	1,237.0 kB	[list of files]
riscv64	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde+b1	669.4 kB	1,078.0 kB	[list of files]
s390x	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	654.8 kB	1,173.0 kB	[list of files]
sh4 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	696.3 kB	1,173.0 kB	[list of files]
sparc64 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	651.9 kB	1,753.0 kB	[list of files]
x32 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	672.1 kB	1,136.0 kB	[list of files]