Paket: wtdbg2 (2.5-10 ve diğerleri)
wtdbg2 için bağlantılar
Debian Kaynakları:
- Hata Raporları
- Developer Information
- Debian Değişim Günlüğü
- Telif Hakkı Dosyası
- Debian Yama Takipçisi
wtdbg2 Kaynak Paketini İndir:
Geliştiriciler:
- Debian Med Packaging Team (QA Sayfası, Posta Arşivi)
- Andreas Tille (QA Sayfası)
- Étienne Mollier (QA Sayfası)
Dış Kaynaklar:
- Ana Sayfa [github.com]
Benzer paketler:
de novo sequence assembler for long noisy reads
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times faster than CANU and FALCON while producing contigs of comparable base accuracy.
During assembly, wtdbg2 chops reads into 1024bp segments, merges similar segments into a vertex and connects vertices based on the segment adjacency on reads. The resulting graph is called fuzzy Bruijn graph (FBG). It is akin to De Bruijn graph but permits mismatches/gaps and keeps read paths when collapsing k-mers. The use of FBG distinguishes wtdbg2 from the majority of long-read assemblers.
wtdbg2 ile İlgili Diğer Paketler
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- dep: libc6 (>= 2.34) [amd64]
- GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
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- dep: libc6.1 (>= 2.31) [ia64]
- GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- dep: zlib1g (>= 1:1.2.0)
- compression library - runtime
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- sug: minimap2
- versatile pairwise aligner for genomic and spliced nucleotide sequences
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- sug: mummer
- Efficient sequence alignment of full genomes
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- sug: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- sug: wtdbg2-examples
- Examples for wtdbg - de novo sequence assembler
wtdbg2 indir
| Mimari | Sürüm | Paket Boyutu | Kurulu Boyut | Dosyalar |
|---|---|---|---|---|
| amd64 | 2.5-10 | 697,2 kB | 6.863,0 kB | [dosya listesi] |
| ia64 (resmi olmayan port) | 2.5-8 | 500,8 kB | 2.364,0 kB | [dosya listesi] |