Пакет: wtdbg2 (2.5-10 и други)

Връзки за wtdbg2

Ресурси за Debian:

Изтегляне на пакет-източник wtdbg2.

Отговорници:

Външни препратки:

Начална страница [github.com]

Подобни пакети:

de novo sequence assembler for long noisy reads

Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times faster than CANU and FALCON while producing contigs of comparable base accuracy.

During assembly, wtdbg2 chops reads into 1024bp segments, merges similar segments into a vertex and connects vertices based on the segment adjacency on reads. The resulting graph is called fuzzy Bruijn graph (FBG). It is akin to De Bruijn graph but permits mismatches/gaps and keeps read paths when collapsing k-mers. The use of FBG distinguishes wtdbg2 from the majority of long-read assemblers.

Други пакети, свързани с wtdbg2

зависимости

препоръчани

предложени

enhances

dep: libc6 (>= 2.34) [amd64]

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: libc6.1 (>= 2.31) [ia64]

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6.1-udeb
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: zlib1g (>= 1:1.2.0)

compression library - runtime

sug: minimap2

versatile pairwise aligner for genomic and spliced nucleotide sequences
sug: mummer

Efficient sequence alignment of full genomes
sug: perl

Larry Wall's Practical Extraction and Report Language
sug: samtools

processing sequence alignments in SAM, BAM and CRAM formats
sug: wtdbg2-examples

Examples for wtdbg - de novo sequence assembler

Изтегляне на wtdbg2

Изтегляне за всички налични архитектури
Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
amd64	2.5-10	697,2 кБ	6 863,0 кБ	[списък на файловете]
ia64 (неофициална архитектура)	2.5-8	500,8 кБ	2 364,0 кБ	[списък на файловете]