Paketti: wtdbg2 (2.5-10 ja muut)
Links for wtdbg2
Debian-palvelut:
Imuroi lähdekoodipaketti wtdbg2:
Ylläpitäjät:
- Debian Med Packaging Team (Laadunvalvontasivu, Mail Archive)
- Andreas Tille (Laadunvalvontasivu)
- Étienne Mollier (Laadunvalvontasivu)
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
de novo sequence assembler for long noisy reads
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times faster than CANU and FALCON while producing contigs of comparable base accuracy.
During assembly, wtdbg2 chops reads into 1024bp segments, merges similar segments into a vertex and connects vertices based on the segment adjacency on reads. The resulting graph is called fuzzy Bruijn graph (FBG). It is akin to De Bruijn graph but permits mismatches/gaps and keeps read paths when collapsing k-mers. The use of FBG distinguishes wtdbg2 from the majority of long-read assemblers.
Muut pakettiin wtdbg2 liittyvät paketit
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- dep: libc6 (>= 2.34) [amd64]
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libc6.1 (>= 2.31) [ia64]
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6.1-udeb
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- dep: zlib1g (>= 1:1.2.0)
- pakkauskirjaston ajonaikaistiedostot
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- sug: minimap2
- versatile pairwise aligner for genomic and spliced nucleotide sequences
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- sug: mummer
- Efficient sequence alignment of full genomes
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- sug: perl
- Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten
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- sug: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- sug: wtdbg2-examples
- Examples for wtdbg - de novo sequence assembler
Imuroi wtdbg2
Arkkitehtuuri | Versio | Paketin koko | Koko asennettuna | Tiedostot |
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amd64 | 2.5-10 | 697.2 kt | 6,863.0 kt | [tiedostoluettelo] |
ia64 (epävirallinen siirros) | 2.5-8 | 500.8 kt | 2,364.0 kt | [tiedostoluettelo] |