Paket: ea-utils (1.1.2+dfsg-9 ve diğerleri)

ea-utils için bağlantılar

Debian Kaynakları:

ea-utils Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [expressionanalysis.github.io]

Benzer paketler:

command-line tools for processing biological sequencing data

Ea-utils provides a set of command-line tools for processing biological sequencing data, barcode demultiplexing, adapter trimming, etc.

Primarily written to support an Illumina based pipeline - but should work with any FASTQs.

Main Tools are:

 * fastq-mcf

Scans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering.

 * fastq-multx

Demultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not.

 * fastq-join

Similar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same "squared distance for anchored alignment" as other tools.

 * varcall

Takes a pileup and calculates variants in a more easily parameterized manner than some other tools.

ea-utils ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: libc6 (>= 2.29) [hppa, m68k, ppc64, sparc64, x32]

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

dep: libc6 (>= 2.32) [sh4]

dep: libc6 (>= 2.34) [alpha, hppa, ia64, m68k, ppc64, sh4, sparc64, x32 değil]
dep: libc6.1 (>= 2.29) [alpha]

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

dep: libc6.1 (>= 2.32) [ia64]
dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

GCC support library

dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386, ia64]
dep: libgcc-s2 (>= 4.2.1) [m68k]

GCC support library
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC support library
dep: libgsl25 (>= 2.6) [alpha]

Paket mevcut değil
dep: libgsl27 (>= 2.7.1) [alpha değil]

GNU Scientific Library (GSL) -- library package
dep: libgslcblas0 (>= 2.7.1) [sparc64]

GNU Scientific Library (GSL) -- blas library package
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: r-base-core

GNU R core of statistical computation and graphics system
dep: r-cran-formula

GNU R package for extended model formulas
dep: r-cran-getopt

GNU R package providing command-line parsing functionality
dep: r-cran-ggplot2

implementation of the Grammar of Graphics
dep: r-cran-hmisc

GNU R miscellaneous functions by Frank Harrell
dep: r-cran-lattice

GNU R package for 'Trellis' graphics
dep: r-cran-survival

GNU R package for survival analysis
dep: zlib1g (>= 1:1.2.3.3)

compression library - runtime

rec: med-config (>= 2.1)

Debian Med general config package

ea-utils indir

Tüm mevcut mimariler için indir
Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	1.1.2+dfsg-9+b1	243,0 kB	870,0 kB	[dosya listesi]
amd64	1.1.2+dfsg-9+b2	230,6 kB	747,0 kB	[dosya listesi]
arm64	1.1.2+dfsg-9+b2	208,9 kB	1.003,0 kB	[dosya listesi]
armel	1.1.2+dfsg-9+b2	208,8 kB	996,0 kB	[dosya listesi]
armhf	1.1.2+dfsg-9+b2	205,7 kB	740,0 kB	[dosya listesi]
hppa (resmi olmayan port)	1.1.2+dfsg-9+b1	237,5 kB	769,0 kB	[dosya listesi]
i386	1.1.2+dfsg-9+b2	242,5 kB	760,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	1.1.2+dfsg-9+b1	300,4 kB	1.332,0 kB	[dosya listesi]
m68k (resmi olmayan port)	1.1.2+dfsg-9+b1	221,4 kB	756,0 kB	[dosya listesi]
mips64el	1.1.2+dfsg-9+b2	229,8 kB	1.094,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	1.1.2+dfsg-9+b1	243,8 kB	1.131,0 kB	[dosya listesi]
ppc64el	1.1.2+dfsg-9+b2	241,5 kB	1.323,0 kB	[dosya listesi]
riscv64 (resmi olmayan port)	1.1.2+dfsg-9+b2	217,4 kB	617,0 kB	[dosya listesi]
s390x	1.1.2+dfsg-9+b2	212,0 kB	747,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	1.1.2+dfsg-9+b1	262,8 kB	703,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	1.1.2+dfsg-9+b1	210,2 kB	769,0 kB	[dosya listesi]
x32 (resmi olmayan port)	1.1.2+dfsg-9+b1	229,9 kB	736,0 kB	[dosya listesi]