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[ Source: prime-phylo  ]

Package: prime-phylo (1.0.11-12 and others)

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bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

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Download prime-phylo

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.0.11-12 753.9 kB3,662.0 kB [list of files]
amd64 1.0.11-12 836.8 kB3,223.0 kB [list of files]
arm64 1.0.11-12 738.1 kB3,382.0 kB [list of files]
hppa (unofficial port) 1.0.11-11 818.0 kB3,309.0 kB [list of files]
ia64 (unofficial port) 1.0.11-11 892.6 kB5,266.0 kB [list of files]
m68k (unofficial port) 1.0.11-11 789.0 kB2,992.0 kB [list of files]
mips64el 1.0.11-12 694.7 kB3,788.0 kB [list of files]
ppc64 (unofficial port) 1.0.11-12 815.3 kB4,151.0 kB [list of files]
ppc64el 1.0.11-12 821.5 kB3,830.0 kB [list of files]
riscv64 1.0.11-12 804.3 kB2,590.0 kB [list of files]
s390x 1.0.11-12 799.9 kB3,226.0 kB [list of files]
sh4 (unofficial port) 1.0.11-11 908.2 kB3,255.0 kB [list of files]
sparc64 (unofficial port) 1.0.11-12 676.0 kB13,519.0 kB [list of files]
x32 (unofficial port) 1.0.11-12 842.2 kB2,935.0 kB [list of files]