Pakket: wtdbg2 (2.5-7 en anderen)
Verwijzigingen voor wtdbg2
Debian bronnen:
Het bronpakket wtdbg2 downloaden:
Beheerders:
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
de novo sequence assembler for long noisy reads
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times faster than CANU and FALCON while producing contigs of comparable base accuracy.
During assembly, wtdbg2 chops reads into 1024bp segments, merges similar segments into a vertex and connects vertices based on the segment adjacency on reads. The resulting graph is called fuzzy Bruijn graph (FBG). It is akin to De Bruijn graph but permits mismatches/gaps and keeps read paths when collapsing k-mers. The use of FBG distinguishes wtdbg2 from the majority of long-read assemblers.
Andere aan wtdbg2 gerelateerde pakketten
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- dep: libc6 (>= 2.29)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
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- dep: zlib1g (>= 1:1.2.0)
- compressiebibliotheek - programma's
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- sug: minimap2
- versatile pairwise aligner for genomic and spliced nucleotide sequences
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- sug: mummer
- Efficient sequence alignment of full genomes
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- sug: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- sug: wtdbg2-examples
- Examples for wtdbg - de novo sequence assembler
wtdbg2 downloaden
| Platform | Versie | Pakketgrootte | Geïnstalleerde grootte | Bestanden |
|---|---|---|---|---|
| amd64 | 2.5-7+b1 | 678,4 kB | 6.643,0 kB | [overzicht] |
| arm64 | 2.5-7+b1 | 328,2 kB | 1.014,0 kB | [overzicht] |
| armel | 2.5-7+b1 | 345,5 kB | 1.184,0 kB | [overzicht] |
| armhf | 2.5-7+b1 | 355,8 kB | 872,0 kB | [overzicht] |
| i386 | 2.5-7+b1 | 866,7 kB | 5.501,0 kB | [overzicht] |
| mips64el | 2.5-7+b1 | 345,5 kB | 1.282,0 kB | [overzicht] |
| mipsel | 2.5-7+b1 | 387,9 kB | 1.384,0 kB | [overzicht] |
| ppc64el | 2.5-7+b1 | 364,4 kB | 1.366,0 kB | [overzicht] |
| s390x | 2.5-7+b1 | 335,9 kB | 1.302,0 kB | [overzicht] |