Pakket: minimap2 (2.17+dfsg-12 en anderen)
Verwijzigingen voor minimap2
Debian bronnen:
Het bronpakket minimap2 downloaden:
Beheerders:
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
versatile pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.
Andere aan minimap2 gerelateerde pakketten
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- dep: libc6 (>= 2.29)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
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- dep: zlib1g (>= 1:1.1.4) [niet arm64]
- compressiebibliotheek - programma's
- dep: zlib1g (>= 1:1.2.3.3) [arm64]
minimap2 downloaden
Platform | Versie | Pakketgrootte | Geïnstalleerde grootte | Bestanden |
---|---|---|---|---|
amd64 | 2.17+dfsg-12+b3 | 354,9 kB | 467,0 kB | [overzicht] |
arm64 | 2.17+dfsg-12+b3 | 346,9 kB | 451,0 kB | [overzicht] |
armel | 2.17+dfsg-12+b3 | 365,9 kB | 506,0 kB | [overzicht] |
armhf | 2.17+dfsg-12+b3 | 365,4 kB | 450,0 kB | [overzicht] |
i386 | 2.17+dfsg-12+b3 | 386,1 kB | 574,0 kB | [overzicht] |
mips64el | 2.17+dfsg-12+b3 | 375,1 kB | 526,0 kB | [overzicht] |
mipsel | 2.17+dfsg-12+b3 | 388,0 kB | 549,0 kB | [overzicht] |
ppc64el | 2.17+dfsg-12+b3 | 365,8 kB | 559,0 kB | [overzicht] |
s390x | 2.17+dfsg-12+b3 | 367,9 kB | 523,0 kB | [overzicht] |