[ Bron: stacks ]
Pakket: stacks (2.55+dfsg-1)
Verwijzigingen voor stacks
Debian bronnen:
Het bronpakket stacks downloaden:
Beheerders:
Externe bronnen:
- Homepage [creskolab.uoregon.edu]
Vergelijkbare pakketten:
pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>
Andere aan stacks gerelateerde pakketten
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- dep: libc6 (>= 2.29)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
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- dep: libdbi-perl
- Perl Database Interface (DBI)
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- dep: libgcc-s1 (>= 3.0) [niet armel, armhf, ppc64el]
- GCC support bibliotheek
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.2.6)
- compressiebibliotheek - programma's
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- rec: libspreadsheet-writeexcel-perl
- module to create Excel spreadsheets
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- rec: littler
- GNU R scripting and command-line front-end -- transition package
Ook een virtueel pakket geboden door: r-cran-littler
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- rec: python3
- interactive high-level object-oriented language (default python3 version)
stacks downloaden
| Platform | Pakketgrootte | Geïnstalleerde grootte | Bestanden |
|---|---|---|---|
| amd64 | 1.041,1 kB | 5.465,0 kB | [overzicht] |
| arm64 | 910,1 kB | 4.849,0 kB | [overzicht] |
| armel | 875,0 kB | 4.664,0 kB | [overzicht] |
| armhf | 900,6 kB | 3.312,0 kB | [overzicht] |
| i386 | 1.112,2 kB | 5.680,0 kB | [overzicht] |
| mips64el | 990,5 kB | 6.867,0 kB | [overzicht] |
| mipsel | 1.014,9 kB | 6.522,0 kB | [overzicht] |
| ppc64el | 1.033,4 kB | 6.741,0 kB | [overzicht] |
| s390x | 912,5 kB | 5.601,0 kB | [overzicht] |