[ 原始碼: stacks ]
套件:stacks(2.55+dfsg-1)
pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>
其他與 stacks 有關的套件
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- dep: libc6 (>= 2.29)
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6-udeb
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- dep: libdbi-perl
- Perl Database Interface (DBI)
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- dep: libgcc-s1 (>= 3.0) [除 armel, armhf, ppc64el]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.2.6)
- 壓縮函式庫 - 跑程式時用(runtime)
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- rec: libspreadsheet-writeexcel-perl
- module to create Excel spreadsheets
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- rec: littler
- GNU R scripting and command-line front-end -- transition package
同時作為一個虛擬套件由這些套件填實: r-cran-littler
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- rec: python3
- interactive high-level object-oriented language (default python3 version)
下載 stacks
硬體架構 | 套件大小 | 安裝後大小 | 檔案 |
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amd64 | 1,041。1 kB | 5,465。0 kB | [檔案列表] |
arm64 | 910。1 kB | 4,849。0 kB | [檔案列表] |
armel | 875。0 kB | 4,664。0 kB | [檔案列表] |
armhf | 900。6 kB | 3,312。0 kB | [檔案列表] |
i386 | 1,112。2 kB | 5,680。0 kB | [檔案列表] |
mips64el | 990。5 kB | 6,867。0 kB | [檔案列表] |
mipsel | 1,014。9 kB | 6,522。0 kB | [檔案列表] |
ppc64el | 1,033。4 kB | 6,741。0 kB | [檔案列表] |
s390x | 912。5 kB | 5,601。0 kB | [檔案列表] |