[ Bron: stacks ]
Pakket: stacks (2.68+dfsg-1 en anderen)
Verwijzigingen voor stacks
Debian bronnen:
Het bronpakket stacks downloaden:
Beheerders:
Externe bronnen:
- Homepage [creskolab.uoregon.edu]
Vergelijkbare pakketten:
pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>
Andere aan stacks gerelateerde pakketten
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- dep: bsdextrautils
- extra utilities from 4.4BSD-Lite
-
- dep: libc6 (>= 2.38) [niet alpha, ia64, sh4]
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
- dep: libc6 (>= 2.39) [sh4]
-
- dep: libc6.1 (>= 2.37) [ia64]
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6.1-udeb
- dep: libc6.1 (>= 2.38) [alpha]
-
- dep: libdbi-perl
- Perl Database Interface (DBI)
-
- dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, s390x, x32]
- GCC support bibliotheek
- dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]
- dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [ia64]
-
- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC support bibliotheek
-
- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC support bibliotheek
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
-
- dep: libstdc++6 (>= 13.1) [ia64, m68k]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 14) [niet ia64, m68k]
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.2.6)
- compressiebibliotheek - programma's
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- rec: libspreadsheet-writeexcel-perl
- module to create Excel spreadsheets
-
- rec: littler
- GNU R scripting and command-line front-end -- transition package
Ook een virtueel pakket geboden door: r-cran-littler
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- sug: gdb
- GNU Debugger
Ook een virtueel pakket geboden door: gdb-minimal
stacks downloaden
| Platform | Versie | Pakketgrootte | Geïnstalleerde grootte | Bestanden |
|---|---|---|---|---|
| alpha (unofficial port) | 2.68+dfsg-1 | 1.111,6 kB | 6.814,0 kB | [overzicht] |
| amd64 | 2.68+dfsg-1 | 1.229,7 kB | 6.153,0 kB | [overzicht] |
| arm64 | 2.68+dfsg-1 | 1.053,9 kB | 5.829,0 kB | [overzicht] |
| armel | 2.68+dfsg-1 | 1.021,0 kB | 5.341,0 kB | [overzicht] |
| armhf | 2.68+dfsg-1 | 1.044,3 kB | 3.781,0 kB | [overzicht] |
| hppa (unofficial port) | 2.68+dfsg-1 | 1.082,3 kB | 5.474,0 kB | [overzicht] |
| i386 | 2.68+dfsg-1 | 1.299,2 kB | 6.437,0 kB | [overzicht] |
| ia64 (unofficial port) | 2.66+dfsg-1+b1 | 1.286,9 kB | 11.193,0 kB | [overzicht] |
| m68k (unofficial port) | 2.68+dfsg-1 | 1.101,0 kB | 5.753,0 kB | [overzicht] |
| mips64el | 2.68+dfsg-1 | 1.102,8 kB | 7.664,0 kB | [overzicht] |
| ppc64 (unofficial port) | 2.68+dfsg-1 | 1.151,8 kB | 7.749,0 kB | [overzicht] |
| ppc64el | 2.68+dfsg-1 | 1.168,3 kB | 7.109,0 kB | [overzicht] |
| riscv64 | 2.68+dfsg-1 | 1.145,9 kB | 4.405,0 kB | [overzicht] |
| s390x | 2.68+dfsg-1 | 1.156,0 kB | 6.289,0 kB | [overzicht] |
| sh4 (unofficial port) | 2.68+dfsg-1 | 1.347,3 kB | 5.689,0 kB | [overzicht] |
| sparc64 (unofficial port) | 2.68+dfsg-1 | 983,6 kB | 12.602,0 kB | [overzicht] |
| x32 (unofficial port) | 2.68+dfsg-1 | 1.235,1 kB | 5.813,0 kB | [overzicht] |