Paketti: sga (0.10.15-5)

Links for sga

Debian-palvelut:

Imuroi lähdekoodipaketti sga:

Ylläpitäjät:

External Resources:

Kotisivu [github.com]

Samankaltaisia paketteja:

de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Muut pakettiin sga liittyvät paketit

depends

recommends

suggests

enhances

dep: libbamtools2.5.1 (>= 2.5.1+dfsg)

dynamic library for manipulating BAM (genome alignment) files
dep: libc6 (>= 2.29)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc1 (>= 1:3.0) [amd64, arm64, mips64el, ppc64el]

Paketti ei saatavilla

dep: libgcc1 (>= 1:3.5) [armel, armhf]

dep: libgcc1 (>= 1:4.2) [mipsel]

dep: libgcc1 (>= 1:7) [i386]
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 9)

GNU standardi C++ -kirjasto, versio 3
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-ruffus

Python3 computation pipeline library widely used in bioinformatics
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: zlib1g (>= 1:1.1.4)

pakkauskirjaston ajonaikaistiedostot

rec: abyss (>= 2.0.2-1)

de novo, parallel, sequence assembler for short reads

Imuroi sga

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	815.0 kt	2,443.0 kt	[tiedostoluettelo]
arm64	591.0 kt	1,747.0 kt	[tiedostoluettelo]
armel	573.9 kt	1,710.0 kt	[tiedostoluettelo]
armhf	603.8 kt	1,258.0 kt	[tiedostoluettelo]
i386	878.4 kt	2,634.0 kt	[tiedostoluettelo]
mips64el	750.3 kt	3,008.0 kt	[tiedostoluettelo]
mipsel	788.6 kt	2,954.0 kt	[tiedostoluettelo]
ppc64el	677.1 kt	2,239.0 kt	[tiedostoluettelo]