Paketti: sga (0.10.15-4)

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Kotisivu [github.com]

Samankaltaisia paketteja:

de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Muut pakettiin sga liittyvät paketit

depends

recommends

suggests

enhances

dep: libbamtools2.5.1

dynamic library for manipulating BAM (genome alignment) files
dep: libc6 (>= 2.23)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc1 (>= 1:3.0)

GCC:n apukirjasto
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 5.2)

GNU standardi C++ -kirjasto, versio 3
dep: python

interactive high-level object-oriented language (Python2 version)
dep: python-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 2)
dep: python-ruffus

Python computation pipeline library widely used in bioinformatics
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: zlib1g (>= 1:1.1.4)

pakkauskirjaston ajonaikaistiedostot

rec: abyss (>= 2.0.2-1)

de novo, parallel, sequence assembler for short reads

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Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	954.4 kt	2,875.0 kt	[tiedostoluettelo]
arm64	670.7 kt	2,011.0 kt	[tiedostoluettelo]