[ Source: parsnp ]
Paketti: parsnp (1.5.4+dfsg-1)
Links for parsnp
Debian-palvelut:
Imuroi lähdekoodipaketti parsnp:
Ylläpitäjät:
External Resources:
- Kotisivu [harvest.readthedocs.org]
Samankaltaisia paketteja:
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
Muut pakettiin parsnp liittyvät paketit
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: harvest-tools
- archiving and postprocessing for reference-compressed genomic multi-alignments
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- dep: libc6 (>= 2.27)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [ei armel, armhf]
- GCC:n apukirjasto
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libmuscle1 (>= 3.7+4565)
- multiple alignment library for protein sequences
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- dep: libstdc++6 (>= 5.2)
- GNU standardi C++ -kirjasto, versio 3
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- dep: mummer
- Efficient sequence alignment of full genomes
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- dep: phipack
- PHI test and other tests of recombination
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- rec: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
Imuroi parsnp
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 185.2 kt | 1,881.0 kt | [tiedostoluettelo] |
| arm64 | 174.9 kt | 1,837.0 kt | [tiedostoluettelo] |
| armel | 167.3 kt | 1,836.0 kt | [tiedostoluettelo] |
| armhf | 164.4 kt | 1,760.0 kt | [tiedostoluettelo] |
| i386 | 188.3 kt | 1,900.0 kt | [tiedostoluettelo] |
| mips64el | 185.0 kt | 1,927.0 kt | [tiedostoluettelo] |
| mipsel | 187.4 kt | 1,925.0 kt | [tiedostoluettelo] |
| ppc64el | 197.4 kt | 1,945.0 kt | [tiedostoluettelo] |
| s390x | 169.9 kt | 1,885.0 kt | [tiedostoluettelo] |