[ Bron: parsnp ]
Pakket: parsnp (1.5.4+dfsg-1)
Verwijzigingen voor parsnp
Debian bronnen:
Het bronpakket parsnp downloaden:
Beheerders:
Externe bronnen:
- Homepage [harvest.readthedocs.org]
Vergelijkbare pakketten:
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
Andere aan parsnp gerelateerde pakketten
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: harvest-tools
- archiving and postprocessing for reference-compressed genomic multi-alignments
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- dep: libc6 (>= 2.27)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [niet armel, armhf]
- GCC support bibliotheek
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libmuscle1 (>= 3.7+4565)
- multiple alignment library for protein sequences
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: mummer
- Efficient sequence alignment of full genomes
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- dep: phipack
- PHI test and other tests of recombination
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- rec: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
parsnp downloaden
| Platform | Pakketgrootte | Geïnstalleerde grootte | Bestanden |
|---|---|---|---|
| amd64 | 185,2 kB | 1.881,0 kB | [overzicht] |
| arm64 | 174,9 kB | 1.837,0 kB | [overzicht] |
| armel | 167,3 kB | 1.836,0 kB | [overzicht] |
| armhf | 164,4 kB | 1.760,0 kB | [overzicht] |
| i386 | 188,3 kB | 1.900,0 kB | [overzicht] |
| mips64el | 185,0 kB | 1.927,0 kB | [overzicht] |
| mipsel | 187,4 kB | 1.925,0 kB | [overzicht] |
| ppc64el | 197,4 kB | 1.945,0 kB | [overzicht] |
| s390x | 169,9 kB | 1.885,0 kB | [overzicht] |