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[ 原始碼: gmap  ]

套件:gmap(2024-05-20+ds-1)

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spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).
GSNAP can align bisulfite-treated DNA.

標籤: 領域: 生物學, field::biology:bioinformatics, field::biology:structural, 角色: 程式, Purpose: Analysing

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硬體架構 套件大小 安裝後大小 檔案
amd64 32,246。6 kB253,490。0 kB [檔案列表]
arm64 6,244。2 kB58,942。0 kB [檔案列表]
armel 4,824。3 kB44,107。0 kB [檔案列表]
armhf 5,383。8 kB41,971。0 kB [檔案列表]
i386 5,559。4 kB44,303。0 kB [檔案列表]
mips64el 5,035。7 kB55,487。0 kB [檔案列表]
ppc64el 6,436。0 kB61,438。0 kB [檔案列表]
riscv64 6,215。8 kB57,262。0 kB [檔案列表]
sh4 (非官方移植版) 5,648。4 kB46,446。0 kB [檔案列表]
x32 (非官方移植版) 5,422。1 kB45,815。0 kB [檔案列表]