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[ 源代码: gmap  ]

软件包:gmap(2024-05-20+ds-1)

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spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).
GSNAP can align bisulfite-treated DNA.

标签: 领域: 生物学, field::biology:bioinformatics, field::biology:structural, 角色: 程序, Purpose: Analysing

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下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 32,246.6 kB253,490.0 kB [文件列表]
arm64 6,244.2 kB58,942.0 kB [文件列表]
armel 4,824.3 kB44,107.0 kB [文件列表]
armhf 5,383.8 kB41,971.0 kB [文件列表]
i386 5,559.4 kB44,303.0 kB [文件列表]
mips64el 5,035.7 kB55,487.0 kB [文件列表]
ppc64el 6,436.0 kB61,438.0 kB [文件列表]
riscv64 6,215.8 kB57,262.0 kB [文件列表]
sh4 (非官方移植版) 5,648.4 kB46,446.0 kB [文件列表]
x32 (非官方移植版) 5,422.1 kB45,815.0 kB [文件列表]