套件:minimap2(2.27+dfsg-1 以及其他的)
versatile pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.
其他與 minimap2 有關的套件
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- dep: libc6 (>= 2.29) [x32]
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6-udeb
- dep: libc6 (>= 2.34) [除 alpha, ia64, sh4, x32]
- dep: libc6 (>= 2.37) [sh4]
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: zlib1g (>= 1:1.1.4) [除 armel, armhf, hppa, m68k]
- 壓縮函式庫 - 跑程式時用(runtime)
- dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, m68k]
下載 minimap2
硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
---|---|---|---|---|
alpha (非官方移植版) | 2.26+dfsg-1 | 404。5 kB | 575。0 kB | [檔案列表] |
amd64 | 2.27+dfsg-1 | 379。4 kB | 507。0 kB | [檔案列表] |
arm64 | 2.27+dfsg-1 | 370。6 kB | 511。0 kB | [檔案列表] |
armel | 2.27+dfsg-1 | 388。8 kB | 550。0 kB | [檔案列表] |
armhf | 2.27+dfsg-1 | 389。8 kB | 482。0 kB | [檔案列表] |
hppa (非官方移植版) | 2.27+dfsg-1 | 411。8 kB | 579。0 kB | [檔案列表] |
i386 | 2.27+dfsg-1 | 386。2 kB | 530。0 kB | [檔案列表] |
ia64 (非官方移植版) | 2.24+dfsg-3+b1 | 441。2 kB | 755。0 kB | [檔案列表] |
m68k (非官方移植版) | 2.27+dfsg-1 | 387。3 kB | 558。0 kB | [檔案列表] |
mips64el | 2.27+dfsg-1 | 403。8 kB | 583。0 kB | [檔案列表] |
ppc64 (非官方移植版) | 2.27+dfsg-1 | 409。7 kB | 639。0 kB | [檔案列表] |
ppc64el | 2.27+dfsg-1 | 390。6 kB | 575。0 kB | [檔案列表] |
riscv64 | 2.27+dfsg-1 | 410。4 kB | 519。0 kB | [檔案列表] |
s390x | 2.27+dfsg-1 | 410。4 kB | 591。0 kB | [檔案列表] |
sh4 (非官方移植版) | 2.24+dfsg-3+b2 | 424。6 kB | 574。0 kB | [檔案列表] |
sparc64 (非官方移植版) | 2.27+dfsg-1 | 392。5 kB | 1,345。0 kB | [檔案列表] |
x32 (非官方移植版) | 2.24+dfsg-2+b1 | 374。5 kB | 493。0 kB | [檔案列表] |