Paketti: minimap2 (2.27+dfsg-1 ja muut)
Links for minimap2
Debian-palvelut:
Imuroi lähdekoodipaketti minimap2:
Ylläpitäjät:
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
versatile pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.
Muut pakettiin minimap2 liittyvät paketit
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- dep: libc6 (>= 2.29) [x32]
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
- dep: libc6 (>= 2.34) [ei alpha, ia64, sh4, x32]
- dep: libc6 (>= 2.37) [sh4]
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: zlib1g (>= 1:1.1.4) [ei armel, armhf, hppa, m68k]
- pakkauskirjaston ajonaikaistiedostot
- dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, m68k]
Imuroi minimap2
| Arkkitehtuuri | Versio | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|---|
| alpha (epävirallinen siirros) | 2.26+dfsg-1 | 404.5 kt | 575.0 kt | [tiedostoluettelo] |
| amd64 | 2.27+dfsg-1 | 379.4 kt | 507.0 kt | [tiedostoluettelo] |
| arm64 | 2.27+dfsg-1 | 370.6 kt | 511.0 kt | [tiedostoluettelo] |
| armel | 2.27+dfsg-1 | 388.8 kt | 550.0 kt | [tiedostoluettelo] |
| armhf | 2.27+dfsg-1 | 389.8 kt | 482.0 kt | [tiedostoluettelo] |
| hppa (epävirallinen siirros) | 2.27+dfsg-1 | 411.8 kt | 579.0 kt | [tiedostoluettelo] |
| i386 | 2.27+dfsg-1 | 386.2 kt | 530.0 kt | [tiedostoluettelo] |
| ia64 (epävirallinen siirros) | 2.24+dfsg-3+b1 | 441.2 kt | 755.0 kt | [tiedostoluettelo] |
| m68k (epävirallinen siirros) | 2.27+dfsg-1 | 387.3 kt | 558.0 kt | [tiedostoluettelo] |
| mips64el | 2.27+dfsg-1 | 403.8 kt | 583.0 kt | [tiedostoluettelo] |
| ppc64 (epävirallinen siirros) | 2.27+dfsg-1 | 409.7 kt | 639.0 kt | [tiedostoluettelo] |
| ppc64el | 2.27+dfsg-1 | 390.6 kt | 575.0 kt | [tiedostoluettelo] |
| riscv64 | 2.27+dfsg-1 | 410.4 kt | 519.0 kt | [tiedostoluettelo] |
| s390x | 2.27+dfsg-1 | 410.4 kt | 591.0 kt | [tiedostoluettelo] |
| sh4 (epävirallinen siirros) | 2.24+dfsg-3+b2 | 424.6 kt | 574.0 kt | [tiedostoluettelo] |
| sparc64 (epävirallinen siirros) | 2.27+dfsg-1 | 392.5 kt | 1,345.0 kt | [tiedostoluettelo] |
| x32 (epävirallinen siirros) | 2.24+dfsg-2+b1 | 374.5 kt | 493.0 kt | [tiedostoluettelo] |