软件包：wtdbg2（2.5-7 以及其他的）
de novo sequence assembler for long noisy reads
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times faster than CANU and FALCON while producing contigs of comparable base accuracy.
During assembly, wtdbg2 chops reads into 1024bp segments, merges similar segments into a vertex and connects vertices based on the segment adjacency on reads. The resulting graph is called fuzzy Bruijn graph (FBG). It is akin to De Bruijn graph but permits mismatches/gaps and keeps read paths when collapsing k-mers. The use of FBG distinguishes wtdbg2 from the majority of long-read assemblers.
其他与 wtdbg2 有关的软件包
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- dep: libc6 (>= 2.29)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: zlib1g (>= 1:1.2.0)
- 压缩库 - 运行时
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- sug: minimap2
- versatile pairwise aligner for genomic and spliced nucleotide sequences
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- sug: mummer
- Efficient sequence alignment of full genomes
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- sug: perl
- 拉里 沃尔的实用报表提取语言(Perl)
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- sug: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- sug: wtdbg2-examples
- Examples for wtdbg - de novo sequence assembler
下载 wtdbg2
| 硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
|---|---|---|---|---|
| amd64 | 2.5-7+b1 | 678.4 kB | 6,643.0 kB | [文件列表] |
| arm64 | 2.5-7+b1 | 328.2 kB | 1,014.0 kB | [文件列表] |
| armel | 2.5-7+b1 | 345.5 kB | 1,184.0 kB | [文件列表] |
| armhf | 2.5-7+b1 | 355.8 kB | 872.0 kB | [文件列表] |
| i386 | 2.5-7+b1 | 866.7 kB | 5,501.0 kB | [文件列表] |
| mips64el | 2.5-7+b1 | 345.5 kB | 1,282.0 kB | [文件列表] |
| mipsel | 2.5-7+b1 | 387.9 kB | 1,384.0 kB | [文件列表] |
| ppc64el | 2.5-7+b1 | 364.4 kB | 1,366.0 kB | [文件列表] |
| s390x | 2.5-7+b1 | 335.9 kB | 1,302.0 kB | [文件列表] |