Paket: tophat (2.1.1+dfsg1-2 ve diğerleri)

tophat için bağlantılar

Debian Kaynakları:

tophat Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [ccb.jhu.edu]

Benzer paketler:

fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.

tophat ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: bowtie2

ultrafast memory-efficient short read aligner

ya da bowtie

Ultrafast memory-efficient short read aligner
dep: libboost-system1.67.0

Operating system (e.g. diagnostics support) library
dep: libboost-thread1.67.0

portable C++ multi-threading
dep: libc6 (>= 2.15) [amd64]

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

dep: libc6 (>= 2.17) [arm64]
dep: libgcc1 (>= 1:3.0)

GCC support library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: python

interactive high-level object-oriented language (Python2 version)
dep: samtools (>= 1.5)

processing sequence alignments in SAM, BAM and CRAM formats
dep: zlib1g (>= 1:1.2.3.3)

compression library - runtime

sug: cufflinks

Transcript assembly, differential expression and regulation for RNA-Seq

tophat indir

Tüm mevcut mimariler için indir
Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	2.1.1+dfsg1-2+b1	654,2 kB	3.832,0 kB	[dosya listesi]
arm64	2.1.1+dfsg1-2+b1	591,7 kB	3.567,0 kB	[dosya listesi]