[ buster ]
[ 原始碼： tophat ]
套件：tophat（2.1.1+dfsg1-2 以及其他的）
tophat 的相關連結
Debian 的資源：
下載原始碼套件 tophat：
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Carlos Borroto (QA 頁面)
- Alexandre Mestiashvili (QA 頁面)
- Andreas Tille (QA 頁面)
外部的資源：
- 主頁 [ccb.jhu.edu]
相似套件：
fast splice junction mapper for RNA-Seq reads
TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.
其他與 tophat 有關的套件
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- dep: libboost-system1.67.0
- Operating system (e.g. diagnostics support) library
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- dep: libboost-thread1.67.0
- portable C++ multi-threading
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- dep: libc6 (>= 2.15) [amd64]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
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- dep: libgcc1 (>= 1:3.0)
- GCC 支援函式庫
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: python
- interactive high-level object-oriented language (Python2 version)
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- dep: samtools (>= 1.5)
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.2.3.3)
- 壓縮函式庫 - 跑程式時用(runtime)
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- sug: cufflinks
- Transcript assembly, differential expression and regulation for RNA-Seq