Paket: r-cran-alakazam (1.3.0-1 och andra)

Länkar för r-cran-alakazam

Debianresurser:

Hämta källkodspaketet r-cran-alakazam:

Ansvariga:

Externa resurser:

Hemsida [cran.r-project.org]

Liknande paket:

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

Andra paket besläktade med r-cran-alakazam

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.11) [mips64el, ppc64, s390x]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb

dep: libc6 (>= 2.14) [amd64]

dep: libc6 (>= 2.16) [x32]

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.2) [hppa]

dep: libc6 (>= 2.27) [riscv64]

dep: libc6 (>= 2.37) [sh4]

dep: libc6 (>= 2.4) [m68k, sparc64]
dep: libc6.1 (>= 2.11) [alpha]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

GCC stödbibliotek

dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC stödbibliotek
dep: libgcc2 (>= 4.2.1) [m68k]

Paketet inte tillgängligt
dep: libstdc++6 (>= 13.1) [ej m68k, sparc64, x32]

GNU standardbibliotek v3 för C++

dep: libstdc++6 (>= 5.2) [m68k, sparc64, x32]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: r-api-3.5 [m68k]

Paketet inte tillgängligt
dep: r-api-4.0 [ej m68k]

virtuellt paket som tillhandahålls av r-base-core
dep: r-base-core (>= 3.6.1-2) [m68k]

GNU R core of statistical computation and graphics system

dep: r-base-core (>= 4.0.2-1) [sparc64]

dep: r-base-core (>= 4.2.1-2) [x32]
dep: r-bioc-biostrings (>= 2.56.0) [ej m68k, sparc64]

GNU R string objects representing biological sequences
dep: r-bioc-genomicalignments (>= 1.24.0) [ej m68k, sparc64]

BioConductor representation and manipulation of short genomic alignments
dep: r-bioc-iranges (>= 2.22.2) [ej m68k, sparc64]

GNU R low-level containers for storing sets of integer ranges
dep: r-cran-airr (>= 1.3) [x32]

GNU R AIRR data representation reference library

dep: r-cran-airr (>= 1.4.1) [ej m68k, sparc64, x32]
dep: r-cran-ape [ej m68k]

GNU R package for Analyses of Phylogenetics and Evolution
dep: r-cran-dplyr (>= 0.8.3) [sparc64]

GNU R grammar of data manipulation

dep: r-cran-dplyr (>= 1.0) [ej m68k, sparc64]
dep: r-cran-ggplot2 (>= 3.2.0) [sparc64]

implementation of the Grammar of Graphics

dep: r-cran-ggplot2 (>= 3.3.4) [x32]

dep: r-cran-ggplot2 (>= 3.4.0) [ej m68k, sparc64, x32]
dep: r-cran-igraph (>= 1.0) [x32]

GNU R network analysis and visualization

dep: r-cran-igraph (>= 1.0.0) [sparc64]

dep: r-cran-igraph (>= 1.5.0) [ej m68k, sparc64, x32]
dep: r-cran-lazyeval [sparc64]

GNU R lazy (non-standard) evaluation
dep: r-cran-matrix [sparc64]

GNU R package of classes for dense and sparse matrices

dep: r-cran-matrix (>= 1.3-0) [ej m68k, sparc64]
dep: r-cran-progress [ej m68k]

GNU R terminal progress bars
dep: r-cran-rcpp (>= 0.12.12) [ej m68k]

GNU R package for Seamless R and C++ Integration
dep: r-cran-readr [ej m68k]

GNU R package to read rectangular text data
dep: r-cran-rlang [ej m68k]

Functions for Base Types and Core R and 'Tidyverse' Features
dep: r-cran-scales [ej m68k]

Scale functions for visualization
dep: r-cran-seqinr [ej m68k]

GNU R biological sequences retrieval and analysis
dep: r-cran-stringi [ej m68k]

GNU R character string processing facilities
dep: r-cran-tibble [ej m68k]

GNU R Simple Data Frames
dep: r-cran-tidyr (>= 1.0) [ej m68k, sparc64]

GNU R package to easily tidy data

dep: r-cran-tidyr (>= 1.0.0) [sparc64]

sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

Hämta r-cran-alakazam

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	1.3.0-1	2.357,8 kbyte	2.916,0 kbyte	[filförteckning]
amd64	1.3.0-1	2.362,0 kbyte	2.845,0 kbyte	[filförteckning]
arm64	1.3.0-1	2.356,8 kbyte	2.853,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	1.3.0-1	2.360,1 kbyte	2.849,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	1.3.0-1	2.368,7 kbyte	2.948,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	0.3.0-1	1.706,4 kbyte	2.053,0 kbyte	[filförteckning]
mips64el	1.3.0-1	2.356,0 kbyte	2.859,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	1.3.0-1	2.362,4 kbyte	2.918,0 kbyte	[filförteckning]
ppc64el	1.3.0-1	2.361,4 kbyte	2.917,0 kbyte	[filförteckning]
riscv64	1.3.0-1+b1	2.364,5 kbyte	2.821,0 kbyte	[filförteckning]
s390x	1.3.0-1	2.360,8 kbyte	2.845,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	1.3.0-1	2.367,9 kbyte	2.851,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	1.0.2-1	1.855,4 kbyte	2.252,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	1.2.1-1	2.352,5 kbyte	2.830,0 kbyte	[filförteckning]