[ Källkod: parsnp ]
Paket: parsnp (1.5.4+dfsg-1)
Länkar för parsnp
Debianresurser:
Hämta källkodspaketet parsnp:
Ansvariga:
Externa resurser:
- Hemsida [harvest.readthedocs.org]
Liknande paket:
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
Andra paket besläktade med parsnp
|
|
|
|
-
- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
-
- dep: harvest-tools
- archiving and postprocessing for reference-compressed genomic multi-alignments
-
- dep: libc6 (>= 2.27)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
-
- dep: libgcc-s1 (>= 3.0) [ej armel, armhf]
- GCC stödbibliotek
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libmuscle1 (>= 3.7+4565)
- multiple alignment library for protein sequences
-
- dep: libstdc++6 (>= 5.2)
- GNU standardbibliotek v3 för C++
-
- dep: mummer
- Efficient sequence alignment of full genomes
-
- dep: phipack
- PHI test and other tests of recombination
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-numpy
- Fast array facility to the Python 3 language
-
- dep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
-
- rec: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
Hämta parsnp
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 185,2 kbyte | 1.881,0 kbyte | [filförteckning] |
| arm64 | 174,9 kbyte | 1.837,0 kbyte | [filförteckning] |
| armel | 167,3 kbyte | 1.836,0 kbyte | [filförteckning] |
| armhf | 164,4 kbyte | 1.760,0 kbyte | [filförteckning] |
| i386 | 188,3 kbyte | 1.900,0 kbyte | [filförteckning] |
| mips64el | 185,0 kbyte | 1.927,0 kbyte | [filförteckning] |
| mipsel | 187,4 kbyte | 1.925,0 kbyte | [filförteckning] |
| ppc64el | 197,4 kbyte | 1.945,0 kbyte | [filförteckning] |
| s390x | 169,9 kbyte | 1.885,0 kbyte | [filförteckning] |