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[ Bron: lighter  ]

Pakket: lighter (1.1.2-5)

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fast and memory-efficient sequencing error corrector

Lighter is a fast, memory-efficient tool for correcting sequencing errors. Lighter avoids counting k-mers. Instead, it uses a pair of Bloom filters, one holding a sample of the input k-mers and the other holding k-mers likely to be correct. As long as the sampling fraction is adjusted in inverse proportion to the depth of sequencing, Bloom filter size can be held constant while maintaining near-constant accuracy. Lighter is parallelized, uses no secondary storage, and is both faster and more memory-efficient than competing approaches while achieving comparable accuracy.

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lighter downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 45,6 kB124,0 kB [overzicht]
arm64 43,9 kB116,0 kB [overzicht]
armel 43,7 kB119,0 kB [overzicht]
armhf 43,8 kB103,0 kB [overzicht]
i386 50,5 kB131,0 kB [overzicht]
mips64el 48,6 kB131,0 kB [overzicht]
mipsel 52,4 kB137,0 kB [overzicht]
ppc64el 48,9 kB180,0 kB [overzicht]
s390x 45,4 kB128,0 kB [overzicht]