[ ソース: parallel-fastq-dump ]
パッケージ: parallel-fastq-dump (0.6.6-3)
parallel-fastq-dump に関するリンク
Debian の資源:
parallel-fastq-dump ソースパッケージをダウンロード:
- [parallel-fastq-dump_0.6.6-3.dsc]
- [parallel-fastq-dump_0.6.6.orig.tar.gz]
- [parallel-fastq-dump_0.6.6-3.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [github.com]
類似のパッケージ:
parallel fastq-dump wrapper
NCBI fastq-dump can be very slow sometimes, even if you have the resources (network, IO, CPU) to go faster, even if you already downloaded the sra file (see the protip below). This tool speeds up the process by dividing the work into multiple threads.
This is possible because fastq-dump have options (-N and -X) to query specific ranges of the sra file, this tool works by dividing the work into the requested number of threads, running multiple fastq-dump in parallel and concatenating the results back together, as if you had just executed a plain fastq-dump call.
その他の parallel-fastq-dump 関連パッケージ
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- dep: python3
- 対話式の高レベルオブジェクト指向言語 (デフォルト python3 バージョン)
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- dep: sra-toolkit
- utilities for the NCBI Sequence Read Archive