Paquet : parallel-fastq-dump (0.6.6-3)
Liens pour parallel-fastq-dump
Ressources Debian :
- Rapports de bogues
- Developer Information
- Journal des modifications Debian
- Fichier de licence
- Suivis des correctifs pour Debian
Télécharger le paquet source parallel-fastq-dump :
- [parallel-fastq-dump_0.6.6-3.dsc]
- [parallel-fastq-dump_0.6.6.orig.tar.gz]
- [parallel-fastq-dump_0.6.6-3.debian.tar.xz]
Responsables :
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
parallel fastq-dump wrapper
NCBI fastq-dump can be very slow sometimes, even if you have the resources (network, IO, CPU) to go faster, even if you already downloaded the sra file (see the protip below). This tool speeds up the process by dividing the work into multiple threads.
This is possible because fastq-dump have options (-N and -X) to query specific ranges of the sra file, this tool works by dividing the work into the requested number of threads, running multiple fastq-dump in parallel and concatenating the results back together, as if you had just executed a plain fastq-dump call.
Autres paquets associés à parallel-fastq-dump
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- dep: python3
- langage orienté objet interactif de haut niveau – version par défaut de Python 3
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- dep: sra-toolkit
- utilities for the NCBI Sequence Read Archive
Télécharger parallel-fastq-dump
Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
---|---|---|---|
amd64 | 4,7 ko | 22,0 ko | [liste des fichiers] |