[ Källkod: parallel-fastq-dump ]
Paket: parallel-fastq-dump (0.6.6-3)
Länkar för parallel-fastq-dump
Debianresurser:
Hämta källkodspaketet parallel-fastq-dump:
- [parallel-fastq-dump_0.6.6-3.dsc]
- [parallel-fastq-dump_0.6.6.orig.tar.gz]
- [parallel-fastq-dump_0.6.6-3.debian.tar.xz]
Ansvariga:
Externa resurser:
- Hemsida [github.com]
Liknande paket:
parallel fastq-dump wrapper
NCBI fastq-dump can be very slow sometimes, even if you have the resources (network, IO, CPU) to go faster, even if you already downloaded the sra file (see the protip below). This tool speeds up the process by dividing the work into multiple threads.
This is possible because fastq-dump have options (-N and -X) to query specific ranges of the sra file, this tool works by dividing the work into the requested number of threads, running multiple fastq-dump in parallel and concatenating the results back together, as if you had just executed a plain fastq-dump call.
Andra paket besläktade med parallel-fastq-dump
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: sra-toolkit
- utilities for the NCBI Sequence Read Archive
Hämta parallel-fastq-dump
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 4,7 kbyte | 22,0 kbyte | [filförteckning] |