[ Source: ugene ]
Paketti: ugene (34.0+dfsg-2) [non-free]
Links for ugene
Debian-palvelut:
Imuroi lähdekoodipaketti ugene:
Ylläpitäjät:
- Debian Med Packaging Team (Laadunvalvontasivu, Mail Archive)
- Steffen Moeller (Laadunvalvontasivu)
- Andreas Tille (Laadunvalvontasivu)
- Olivier Sallou (Laadunvalvontasivu)
External Resources:
- Kotisivu [ugene.unipro.ru]
Samankaltaisia paketteja:
integrated bioinformatics toolkit
Unipro UGENE is a cross-platform visual environment for DNA and protein sequence analysis. UGENE integrates the most important bioinformatics computational algorithms and provides an easy-to-use GUI for performing complex analysis of the genomic data. One of the main features of UGENE is a designer for custom bioinformatics workflows.
Muut pakettiin ugene liittyvät paketit
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- dep: libc6 (>= 2.30)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC:n apukirjasto
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- dep: libgl1
- Vendor neutral GL dispatch library -- legacy GL support
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- dep: libglu1-mesa
- Mesa OpenGL utility library (GLU)
- tai libglu1
- näennäispaketti, jonka toteuttaa libglu1-mesa
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- dep: libqt5core5a (>= 5.15.1)
- Qt 5 core module
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- dep: libqt5gui5 (>= 5.14.1)
- Qt 5 GUI module
- tai libqt5gui5-gles (>= 5.14.1)
- Qt 5 GUI module — OpenGL ES variant
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- dep: libqt5network5 (>= 5.0.2)
- Qt 5 network module
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- dep: libqt5opengl5 (>= 5.0.2)
- Qt 5 OpenGL module
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- dep: libqt5printsupport5 (>= 5.0.2)
- Qt 5 print support module
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- dep: libqt5script5 (>= 5.6.0~beta)
- Qt 5 script module
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- dep: libqt5scripttools5 (>= 5.6.0~beta)
- Qt 5 script tools module
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- dep: libqt5sql5 (>= 5.0.2)
- Qt 5 SQL module
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- dep: libqt5svg5 (>= 5.6.0~beta)
- Qt 5 SVG module
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- dep: libqt5test5 (>= 5.6.0~beta)
- Qt 5 test module
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- dep: libqt5webchannel5 (>= 5.6.1)
- Web communication library for Qt
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- dep: libqt5webenginewidgets5 (>= 5.14.1)
- Web content engine library for Qt - Widget
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- dep: libqt5websockets5 (>= 5.6.0)
- Qt 5 Web Sockets module
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- dep: libqt5widgets5 (>= 5.15.1)
- Qt 5 widgets module
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- dep: libqt5xml5 (>= 5.1.0)
- Qt 5 XML module
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- dep: libsqlite3-0 (>= 3.7.11)
- SQLite 3 (jaettu kirjasto)
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- dep: libstdc++6 (>= 9)
- GNU standardi C++ -kirjasto, versio 3
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- dep: ugene-data
- required data for UGENE - integrated bioinformatics toolkit
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- dep: zlib1g (>= 1:1.2.3.3)
- pakkauskirjaston ajonaikaistiedostot
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- rec: bedtools
- suite of utilities for comparing genomic features
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- rec: bowtie
- Ultrafast memory-efficient short read aligner
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- rec: bowtie2
- ultrafast memory-efficient short read aligner
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- rec: bwa
- Burrows-Wheeler Aligner
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- rec: clustalo
- General-purpose multiple sequence alignment program for proteins
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- rec: clustalw
- global multiple nucleotide or peptide sequence alignment
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- rec: cutadapt
- Clean biological sequences from high-throughput sequencing reads
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- rec: default-jre-headless
- Standard Java or Java compatible Runtime (headless)
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- rec: fastqc
- quality control for high throughput sequence data
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- rec: hisat2
- graph-based alignment of short nucleotide reads to many genomes
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- rec: hmmer
- profile hidden Markov models for protein sequence analysis
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- rec: hmmer2
- profile hidden Markov models for protein sequence analysis
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- rec: kalign
- Global and progressive multiple sequence alignment
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- rec: kraken
- assigning taxonomic labels to short DNA sequences
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- rec: macs
- Model-based Analysis of ChIP-Seq on short reads sequencers
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- rec: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- rec: mrbayes
- Bayesian Inference of Phylogeny
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- rec: muscle
- Multiple alignment program of protein sequences
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- rec: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- rec: phyml
- Phylogenetic estimation using Maximum Likelihood
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- rec: primer3
- tool to design flanking oligo nucleotides for DNA amplification
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- rec: r-base
- GNU R statistical computation and graphics system
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- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: spades
- genome assembler for single-cell and isolates data sets
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- rec: t-coffee
- Multiple Sequence Alignment
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- rec: trimmomatic
- flexible read trimming tool for Illumina NGS data
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- rec: vcftools
- Collection of tools to work with VCF files
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- sug: cufflinks
- Transcript assembly, differential expression and regulation for RNA-Seq
Imuroi ugene
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 16,464.7 kt | 59,996.0 kt | [tiedostoluettelo] |