Paketti: spades (3.13.1+dfsg-2 ja muut)

Links for spades

Debian-palvelut:

Imuroi lähdekoodipaketti spades:

Ylläpitäjät:

External Resources:

Kotisivu [cab.spbu.ru]

Samankaltaisia paketteja:

genome assembler for single-cell and isolates data sets

The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.

Tagit: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Implemented in: Python, User Interface: interface::commandline, role::program, Scope: Utility, Works with: works-with::biological-sequence, works-with::file

Muut pakettiin spades liittyvät paketit

depends

recommends

suggests

enhances

dep: bamtools

toolkit for manipulating BAM (genome alignment) files
dep: bwa

Burrows-Wheeler Aligner
dep: libc6 (>= 2.29)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc-s1 (>= 4.0)

GCC:n apukirjasto
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libhat-trie0

HAT-trie, an extremely efficient (space and time) modern variant of tries
dep: libnlopt0 (>= 2.6.1)

nonlinear optimization library
dep: libssw0 (>= 1.1)

fast SIMD parallelized implementation of the Smith-Waterman algorithm
dep: libstdc++6 (>= 9)

GNU standardi C++ -kirjasto, versio 3
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-distutils

distutils package for Python 3.x
dep: python3-joblib

tools to provide lightweight pipelining in Python
dep: python3-yaml

YAML parser and emitter for Python3
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: zlib1g (>= 1:1.2.3.3)

pakkauskirjaston ajonaikaistiedostot

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Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	3.13.1+dfsg-2+b2	4,664.7 kt	22,622.0 kt	[tiedostoluettelo]