[ Source: spaln ]
Paketti: spaln (2.4.1+dfsg-3)
Links for spaln
Debian-palvelut:
Imuroi lähdekoodipaketti spaln:
Ylläpitäjät:
External Resources:
- Kotisivu [www.genome.ist.i.kyoto-u.ac.jp]
Samankaltaisia paketteja:
splicing-aware transcript-alignment to genomic DNA
Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.
spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.
Muut pakettiin spaln liittyvät paketit
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- dep: libc6 (>= 2.29)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [ei armel, armhf]
- GCC:n apukirjasto
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libstdc++6 (>= 5)
- GNU standardi C++ -kirjasto, versio 3
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- dep: spaln-data
- splicing-aware transcript-alignment to genomic DNA (data)
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- dep: zlib1g (>= 1:1.2.0.2)
- pakkauskirjaston ajonaikaistiedostot
Imuroi spaln
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 345.1 kt | 855.0 kt | [tiedostoluettelo] |
| arm64 | 311.5 kt | 775.0 kt | [tiedostoluettelo] |
| armel | 296.6 kt | 781.0 kt | [tiedostoluettelo] |
| armhf | 303.3 kt | 589.0 kt | [tiedostoluettelo] |
| i386 | 349.5 kt | 881.0 kt | [tiedostoluettelo] |
| mips64el | 330.2 kt | 955.0 kt | [tiedostoluettelo] |
| mipsel | 323.5 kt | 895.0 kt | [tiedostoluettelo] |
| ppc64el | 360.1 kt | 1,120.0 kt | [tiedostoluettelo] |
| s390x | 349.1 kt | 1,003.0 kt | [tiedostoluettelo] |