all options
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Source: samtools  ]

Package: samtools (1.20-3)

Links for samtools

Screenshot

Debian Resources:

Download Source Package samtools:

Maintainers:

External Resources:

Similar packages:

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

Other Packages Related to samtools

  • depends
  • recommends
  • suggests
  • enhances

Download samtools

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 637.6 kB1,409.0 kB [list of files]
arm64 609.3 kB1,673.0 kB [list of files]
armel 601.7 kB1,330.0 kB [list of files]
armhf 605.0 kB1,146.0 kB [list of files]
i386 672.3 kB1,538.0 kB [list of files]
mips64el 615.2 kB1,824.0 kB [list of files]
ppc64el 662.7 kB1,929.0 kB [list of files]
riscv64 647.5 kB1,281.0 kB [list of files]
s390x 643.8 kB1,485.0 kB [list of files]