Package: libvcflib-tools (1.0.3+dfsg-2)

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C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

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dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, mips64el, ppc64el]

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dep: libfastahack0 (>= 1.0.0+dfsg) [not amd64, arm64, mips64el, ppc64el]
dep: libgcc-s1 (>= 3.0) [not armel, armhf, ppc64el]

GCC support library

dep: libgcc-s1 (>= 3.4.4) [ppc64el]

dep: libgcc-s1 (>= 3.5) [armel, armhf]
dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

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dep: libtabixpp0 (>= 1.0.0)

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dep: libvcflib1 (>= 1.0.3+dfsg)

C++ library for parsing and manipulating VCF files
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: r-base-core

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dep: r-cran-ggplot2

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