Package: libvcflib-tools (1.0.9+dfsg1-3 and others)

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C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Other Packages Related to libvcflib-tools

depends

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dep: libc6 (>= 2.34)

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also a virtual package provided by libc6-udeb
dep: libdisorder0 (>= 0.0.2)

library for entropy measurement of byte streams
dep: libfastahack0 (>= 0.0+git20160702.bbc645f)

library for indexing and sequence extraction from FASTA files (lib)
dep: libgcc-s1 (>= 3.3.1) [not ppc64el]

GCC support library

dep: libgcc-s1 (>= 3.4.4) [ppc64el]
dep: libgomp1 (>= 4.2.1)

GCC OpenMP (GOMP) support library
dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

determine similar regions between two strings or genomic sequences (lib)
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: libtabixpp0t64 (>= 1.0.0)

C++ wrapper to tabix indexer
dep: libvcflib2 (>= 1.0.9+dfsg1)

C++ library for parsing and manipulating VCF files
dep: libwfa2-0 (>= 2.3.3)

exact gap-affine algorithm (shared library)
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: r-base-core

GNU R core of statistical computation and graphics system
dep: r-cran-ggplot2

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sug: r-cran-pracma

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amd64	1.0.9+dfsg1-3+b1	635.3 kB	3,830.0 kB	[list of files]
arm64	1.0.9+dfsg1-3+b1	564.4 kB	6,594.0 kB	[list of files]
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ppc64el	1.0.9+dfsg1-3+b1	624.2 kB	6,786.0 kB	[list of files]