[ Source: skewer ]
Package: skewer (0.2.2-6 and others)
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Efterbehandling af høj-gennemløb DNA-sekvenslæsninger
Skewer implementerer den bit-maskede k-forskels matchende algoritme dedikeret til opgaven med adapter-tilpasning og den er specielt designet til at behandle næstegenerations sekventering (NGS) paired-end sekvenser.
Funktioner
* Registrering og fjernelse af adaptersekvenser * Indsættelse og sletning tilladt i mønstermatchning * Målrettet læsningerne Single End, Paired End (PE) og Long Mate Pair (LMP) * Demultiplexing af stregkodede sekventeringsafviklinger * Tilpasning baseret på phred-kvalitetsbedømmelser * IUPAC-tegn for stregkoder og adaptere * Komprimeret understøttelse for inddata og uddata
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
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Download skewer
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
alpha (unofficial port) | 0.2.2-6 | 87.6 kB | 227.0 kB | [list of files] |
amd64 | 0.2.2-6+b1 | 86.4 kB | 216.0 kB | [list of files] |
arm64 | 0.2.2-6+b1 | 76.4 kB | 235.0 kB | [list of files] |
armel | 0.2.2-6+b1 | 75.2 kB | 235.0 kB | [list of files] |
armhf | 0.2.2-6+b1 | 75.5 kB | 171.0 kB | [list of files] |
hppa (unofficial port) | 0.2.2-6 | 83.6 kB | 195.0 kB | [list of files] |
i386 | 0.2.2-6+b1 | 90.2 kB | 231.0 kB | [list of files] |
ia64 (unofficial port) | 0.2.2-6 | 107.3 kB | 387.0 kB | [list of files] |
m68k (unofficial port) | 0.2.2-6 | 83.4 kB | 209.0 kB | [list of files] |
mips64el | 0.2.2-6+b1 | 81.5 kB | 242.0 kB | [list of files] |
ppc64 (unofficial port) | 0.2.2-6 | 83.7 kB | 235.0 kB | [list of files] |
ppc64el | 0.2.2-6+b1 | 84.9 kB | 236.0 kB | [list of files] |
riscv64 | 0.2.2-6+b1 | 80.3 kB | 159.0 kB | [list of files] |
s390x | 0.2.2-6+b1 | 76.0 kB | 199.0 kB | [list of files] |
sh4 (unofficial port) | 0.2.2-6 | 98.1 kB | 190.0 kB | [list of files] |
sparc64 (unofficial port) | 0.2.2-6 | 75.2 kB | 197.0 kB | [list of files] |
x32 (unofficial port) | 0.2.2-6 | 86.1 kB | 201.0 kB | [list of files] |