Пакет: minia (3.2.6-3)

Връзки за minia

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Начална страница [minia.genouest.org]

Подобни пакети:

short-read biological sequence assembler

What was referred to as "next-generation" DNA sequencing up to the year 2020 delivered only "short" reads up to ~600 base pairs in length that would then have to be puzzled by random overlaps in their sequence towards a complete genome. This is the genome assembly. And there are many biological pitfalls on long stretches of low complexity regions and copy number variations and other sorts of redundancies that render this difficult.

This package provides a short-read DNA sequence assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.

The output of Minia is a set of contigs, i.e. stretches of gap-free linear overlaps of short reads. In the best possible case this is a whole chromosome.

Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet).

Други пакети, свързани с minia

зависимости

препоръчани

предложени

enhances

dep: bc

GNU bc arbitrary precision calculator language
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: libgatbcore3 (>= 1.4.2+dfsg)

dynamic library of the Genome Analysis Toolbox
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libhdf5-103-1

HDF5 C runtime files - serial version
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3
dep: zlib1g

compression library - runtime

rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats

sug: bandage

Bioinformatics Application for Navigating De novo Assembly Graphs Easily

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
ppc64el	393,8 кБ	824,0 кБ	[списък на файловете]