[ 原始碼： unicycler ]
套件：unicycler（0.5.0+dfsg-1）
unicycler 的相關連結
Debian 的資源：
下載原始碼套件 unicycler：
- [unicycler_0.5.0+dfsg-1.dsc]
- [unicycler_0.5.0+dfsg.orig.tar.xz]
- [unicycler_0.5.0+dfsg-1.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [github.com]
相似套件：
hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.
其他與 unicycler 有關的套件
|
|
|
|
-
- dep: bcftools
- genomic variant calling and manipulation of VCF/BCF files
-
- dep: bowtie2
- ultrafast memory-efficient short read aligner
-
- dep: default-jre
- Standard Java or Java compatible Runtime
-
- dep: libc6 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: miniasm
- ultrafast de novo assembler for long noisy DNA sequencing reads
-
- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
-
- dep: pilon
- automated genome assembly improvement and variant detection tool
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (>= 3~)
-
- dep: python3-setuptools
- Python3 Distutils Enhancements
-
- dep: racon
- consensus module for raw de novo DNA assembly of long uncorrected reads
-
- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- dep: spades (>= 3.14)
- genome assembler for single-cell and isolates data sets
-
- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)
-
- rec: unicycler-data
- hybrid assembly pipeline for bacterial genomes (data package)