Paket: unicycler (0.5.0+dfsg-1)

unicycler için bağlantılar

Debian Kaynakları:

unicycler Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [github.com]

Benzer paketler:

hybrid assembly pipeline for bacterial genomes

Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.

unicycler ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: bcftools

genomic variant calling and manipulation of VCF/BCF files
dep: bowtie2

ultrafast memory-efficient short read aligner
dep: default-jre

Standard Java or Java compatible Runtime
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3
dep: miniasm

ultrafast de novo assembler for long noisy DNA sequencing reads
dep: ncbi-blast+

next generation suite of BLAST sequence search tools
dep: pilon

automated genome assembly improvement and variant detection tool
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (>= 3~)
dep: python3-setuptools

Python3 Distutils Enhancements
dep: racon

consensus module for raw de novo DNA assembly of long uncorrected reads
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: spades (>= 3.14)

genome assembler for single-cell and isolates data sets
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

rec: unicycler-data

hybrid assembly pipeline for bacterial genomes (data package)

unicycler indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	843,0 kB	3.108,0 kB	[dosya listesi]