套件：t-coffee（13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 以及其他的）

t-coffee 的相關連結

Debian 的資源：

下載原始碼套件 t-coffee：

維護小組：

外部的資源：

主頁 [www.tcoffee.org]

相似套件：

Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

標籤: 領域: 生物學, 生物資訊學, 實做語言: implemented-in::c, interface::commandline, 角色: 程式, 範圍: 實用程式, Purpose: use::analysing, use::comparing, 支援的格式: 需要一個額外的標籤, works-with-format::plaintext, works-with::TODO

其他與 t-coffee 有關的套件

依賴

推薦

建議

增強

dep: libc6 (>= 2.34) [除 alpha, ia64, sh4]

GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb

dep: libc6 (>= 2.36) [sh4]
dep: libc6.1 (>= 2.33) [alpha]

GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6.1-udeb

dep: libc6.1 (>= 2.36) [ia64]
dep: libgcc-s1 (>= 3.0) [除 armel, armhf, hppa, ia64, m68k, ppc64, ppc64el, sh4]

GCC 支援函式庫

dep: libgcc-s1 (>= 3.3.4) [sh4]

dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s2 (>= 4.2.1) [m68k]

GCC 支援函式庫
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC 支援函式庫
dep: libstdc++6 (>= 13.1) [riscv64]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 4.1.1) [除 riscv64]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime

rec: amap-align

Protein multiple alignment by sequence annealing
rec: clustalo

General-purpose multiple sequence alignment program for proteins
rec: clustalw

global multiple nucleotide or peptide sequence alignment
rec: dialign-tx

Segment-based multiple sequence alignment
rec: fsa

Fast Statistical Alignment of protein, RNA or DNA sequences
rec: kalign

Global and progressive multiple sequence alignment
rec: libsoap-lite-perl

Perl implementation of a SOAP client and server
rec: libxml-simple-perl

Perl module for reading and writing XML
rec: mafft

Multiple alignment program for amino acid or nucleotide sequences
rec: muscle

Multiple alignment program of protein sequences
rec: mustang

multiple structural alignment of proteins
rec: ncbi-blast+

next generation suite of BLAST sequence search tools
rec: poa

Partial Order Alignment for multiple sequence alignment
rec: prank

Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
rec: probcons

PROBabilistic CONSistency-based multiple sequence alignment
rec: proda

multiple alignment of protein sequences
rec: tm-align

structural alignment of proteins

sug: boxshade

Pretty-printing of multiple sequence alignments
sug: seaview

Multiplatform interface for sequence alignment and phylogeny
sug: t-coffee-examples

annotated examples for the use of T-Coffee

下載 t-coffee

下載可用於所有硬體架構的
硬體架構	版本	套件大小	安裝後大小	檔案
alpha （非官方移植版）	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	997。0 kB	3，340。0 kB	[檔案列表]
amd64	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1，007。5 kB	2，715。0 kB	[檔案列表]
arm64	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	894。1 kB	2，634。0 kB	[檔案列表]
armel	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	846。5 kB	2，569。0 kB	[檔案列表]
armhf	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	857。3 kB	1，929。0 kB	[檔案列表]
hppa （非官方移植版）	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	910。9 kB	2，720。0 kB	[檔案列表]
i386	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1，010。5 kB	3，033。0 kB	[檔案列表]
ia64 （非官方移植版）	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1，208。2 kB	5，405。0 kB	[檔案列表]
m68k （非官方移植版）	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	893。9 kB	2，825。0 kB	[檔案列表]
mips64el	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	950。6 kB	3，380。0 kB	[檔案列表]
ppc64 （非官方移植版）	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1，020。1 kB	3，466。0 kB	[檔案列表]
ppc64el	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1，063。4 kB	3，402。0 kB	[檔案列表]
riscv64	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1+b1	996。7 kB	2，295。0 kB	[檔案列表]
s390x	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	921。2 kB	2，974。0 kB	[檔案列表]
sh4 （非官方移植版）	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1，073。0 kB	2，570。0 kB	[檔案列表]
sparc64 （非官方移植版）	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	835。5 kB	3，150。0 kB	[檔案列表]
x32 （非官方移植版）	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1，010。6 kB	2，710。0 kB	[檔案列表]