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[ 原始碼: rna-star  ]

套件:rna-star(2.7.11b+dfsg-2 以及其他的)

rna-star 的相關連結

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ultrafast universal RNA-seq aligner

Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.

標籤: 生物學: 核酸, 領域: 生物學, field::biology:bioinformatics, implemented-in::c++, 角色: 程式, Purpose: use::analysing, works-with::biological-sequence

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下載 rna-star

下載可用於所有硬體架構的
硬體架構 版本 套件大小 安裝後大小 檔案
alpha (非官方移植版) 2.7.11b+dfsg-2 742。1 kB3,087。0 kB [檔案列表]
amd64 2.7.11b+dfsg-2 3,462。6 kB22,219。0 kB [檔案列表]
arm64 2.7.11b+dfsg-2 711。3 kB2,699。0 kB [檔案列表]
m68k (非官方移植版) 2.4.2a+dfsg-1+b1 314。5 kB691。0 kB [檔案列表]
mips64el 2.7.11b+dfsg-2 671。9 kB2,997。0 kB [檔案列表]
ppc64el 2.7.11b+dfsg-2 743。5 kB3,083。0 kB [檔案列表]
riscv64 2.7.11b+dfsg-2 752。0 kB2,275。0 kB [檔案列表]
sh4 (非官方移植版) 2.4.2a+dfsg-1 405。5 kB734。0 kB [檔案列表]
x32 (非官方移植版) 2.5.2a+dfsg-2 361。0 kB797。0 kB [檔案列表]