套件：rna-star（2.7.11b+dfsg-1 以及其他的）
rna-star 的相關連結
Debian 的資源：
下載原始碼套件 rna-star：
- [rna-star_2.7.11b+dfsg-1.dsc]
- [rna-star_2.7.11b+dfsg.orig.tar.xz]
- [rna-star_2.7.11b+dfsg-1.debian.tar.xz]
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Steffen Moeller (QA 頁面)
- Andreas Tille (QA 頁面)
- Sascha Steinbiss (QA 頁面)
外部的資源：
- 主頁 [github.com]
相似套件：
ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.
其他與 rna-star 有關的套件
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- dep: libc6 (>= 2.16) [x32]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.19) [sh4]
- dep: libc6 (>= 2.34) [除 m68k, sh4, x32]
- dep: libc6 (>= 2.4) [m68k]
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- dep: libgcc-s1 (>= 3.3.1) [amd64, arm64, mips64el]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
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- dep: libgcc1 (>= 1:3.3.1) [x32]
- 套件暫時不可用
- dep: libgcc1 (>= 1:4.2.1) [sh4]
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- dep: libgcc2 (>= 4.2.1) [m68k]
- 套件暫時不可用
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- dep: libgomp1 (>= 4.9) [x32]
- GCC OpenMP (GOMP) support library
- dep: libgomp1 (>= 6) [除 m68k, sh4, x32]
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- dep: libhts1 (>= 1.0) [m68k, sh4, x32]
- 套件暫時不可用
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- dep: libhts3t64 (>= 1.17) [除 m68k, sh4, x32]
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 13.1) [除 m68k, sh4, x32]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 4.9) [sh4]
- dep: libstdc++6 (>= 5.2) [m68k, x32]
下載 rna-star
| 硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
|---|---|---|---|---|
| amd64 | 2.7.11b+dfsg-1+b1 | 3，363。4 kB | 21，608。0 kB | [檔案列表] |
| arm64 | 2.7.11b+dfsg-1+b1 | 702。8 kB | 2，572。0 kB | [檔案列表] |
| m68k （非官方移植版） | 2.4.2a+dfsg-1+b1 | 314。5 kB | 691。0 kB | [檔案列表] |
| mips64el | 2.7.11b+dfsg-1+b1 | 678。8 kB | 3，000。0 kB | [檔案列表] |
| ppc64el | 2.7.11b+dfsg-1+b1 | 745。0 kB | 2，956。0 kB | [檔案列表] |
| sh4 （非官方移植版） | 2.4.2a+dfsg-1 | 405。5 kB | 734。0 kB | [檔案列表] |
| x32 （非官方移植版） | 2.5.2a+dfsg-2 | 361。0 kB | 797。0 kB | [檔案列表] |