[ bullseye ]
[ sid ]
[ 原始碼： vg ]
套件：vg（1.30.0+ds-1 以及其他的）
tools for working with genome variation graphs
variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods
Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of:
- nodes, which are labeled by sequences and ids - edges, which connect two nodes via either of their respective ends - paths, describe genomes, sequence alignments, and annotations (such as gene models and transcripts) as walks through nodes connected by edges
This model is similar to a number of sequence graphs that have been used in assembly and multiple sequence alignment. Paths provide coordinate systems relative to genomes encoded in the graph, allowing stable mappings to be produced even if the structure of the graph is changed.
其他與 vg 有關的套件
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- dep: libatomic1 (>= 4.8)
- support library providing __atomic built-in functions
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- dep: libboost-program-options1.74.0 (>= 1.74.0)
- program options library for C++
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- dep: libc6 (>= 2.29)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libcairo2 (>= 1.2.4)
- Cairo 2D vector graphics library
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- dep: libdivsufsort3 (>= 2.0.1)
- fast suffix array construction
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- dep: libdw1 (>= 0.126) [amd64]
- library that provides access to the DWARF debug information
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- dep: libfastahack0 (>= 0.0+git20160702.bbc645f)
- library for indexing and sequence extraction from FASTA files (lib)
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- dep: libgcc-s1 (>= 4.2)
- GCC 支援函式庫
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libjansson4 (>= 2.2)
- C library for encoding, decoding and manipulating JSON data
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- dep: libjemalloc2 (>= 5.0.0)
- general-purpose scalable concurrent malloc(3) implementation
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- dep: libraptor2-0 (>= 2.0.14)
- Raptor 2 RDF syntax library
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- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: libtabixpp0 (>= 1.0.0)
- C++ wrapper to tabix indexer
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- dep: libvcflib1 (>= 1.0.2+dfsg)
- C++ library for parsing and manipulating VCF files
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)