Paket: vg (1.30.0+ds-1 och andra)

Länkar för vg

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Externa resurser:

Hemsida [github.com]

Liknande paket:

tools for working with genome variation graphs

variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods

Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of:

 - nodes, which are labeled by sequences and ids
 - edges, which connect two nodes via either of their respective ends
 - paths, describe genomes, sequence alignments, and annotations (such as gene
  models and transcripts) as walks through nodes connected by edges

This model is similar to a number of sequence graphs that have been used in assembly and multiple sequence alignment. Paths provide coordinate systems relative to genomes encoded in the graph, allowing stable mappings to be produced even if the structure of the graph is changed.

Andra paket besläktade med vg

beror

rekommenderar

föreslår

enhances

dep: libatomic1 (>= 4.8)

support library providing __atomic built-in functions
dep: libboost-program-options1.74.0 (>= 1.74.0)

program options library for C++
dep: libc6 (>= 2.29)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libcairo2 (>= 1.2.4)

Cairo 2D vector graphics library
dep: libdivsufsort3 (>= 2.0.1)

fast suffix array construction
dep: libdw1 (>= 0.126) [amd64]

library that provides access to the DWARF debug information
dep: libfastahack0 (>= 0.0+git20160702.bbc645f)

library for indexing and sequence extraction from FASTA files (lib)
dep: libgcc-s1 (>= 4.2)

GCC stödbibliotek
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libjansson4 (>= 2.2)

C library for encoding, decoding and manipulating JSON data
dep: libjemalloc2 (>= 5.0.0)

general-purpose scalable concurrent malloc(3) implementation
dep: libraptor2-0 (>= 2.0.14)

Raptor 2 RDF syntax library
dep: libssw0 (>= 1.1)

fast SIMD parallelized implementation of the Smith-Waterman algorithm
dep: libstdc++6 (>= 9)

GNU standardbibliotek v3 för C++
dep: libtabixpp0 (>= 1.0.0)

C++ wrapper to tabix indexer
dep: libvcflib1 (>= 1.0.2+dfsg)

C++ library for parsing and manipulating VCF files
dep: zlib1g (>= 1:1.1.4)

Kompressionsbibliotek - körtidspaket

Hämta vg

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	1.30.0+ds-1+b1	47.834,9 kbyte	175.874,0 kbyte	[filförteckning]
mips64el	1.30.0+ds-1+b1	6.338,0 kbyte	33.290,0 kbyte	[filförteckning]