Paquet : vg (1.30.0+ds-1 et autres)

Liens pour vg

Ressources Debian :

Télécharger le paquet source vg :

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Ressources externes :

Page d'accueil [github.com]

Paquets similaires :

tools for working with genome variation graphs

variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods

Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of:

 - nodes, which are labeled by sequences and ids
 - edges, which connect two nodes via either of their respective ends
 - paths, describe genomes, sequence alignments, and annotations (such as gene
  models and transcripts) as walks through nodes connected by edges

This model is similar to a number of sequence graphs that have been used in assembly and multiple sequence alignment. Paths provide coordinate systems relative to genomes encoded in the graph, allowing stable mappings to be produced even if the structure of the graph is changed.

Autres paquets associés à vg

dépendances

recommandations

suggestions

enhances

dep: libatomic1 (>= 4.8)

bibliothèque de prise en charge fournissant des fonctions internes __atomic
dep: libboost-program-options1.74.0 (>= 1.74.0)

bibliothèque d'options de programmes pour C++
dep: libc6 (>= 2.29)

bibliothèque C GNU : bibliothèques partagées
un paquet virtuel est également fourni par libc6-udeb
dep: libcairo2 (>= 1.2.4)

Bibliothèque graphique vectorielle Cairo 2D
dep: libdivsufsort3 (>= 2.0.1)

fast suffix array construction
dep: libdw1 (>= 0.126) [amd64]

bibliothèque donnant accès aux informations de débogage de DWARF
dep: libfastahack0 (>= 0.0+git20160702.bbc645f)

library for indexing and sequence extraction from FASTA files (lib)
dep: libgcc-s1 (>= 4.2)

bibliothèque de prise en charge de GCC
dep: libgomp1 (>= 6)

bibliothèque GCC pour OpenMP (GOMP)
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libjansson4 (>= 2.2)

bibliothèque⋅C pour encoder, décoder et manipuler des données JSON
dep: libjemalloc2 (>= 5.0.0)

general-purpose scalable concurrent malloc(3) implementation
dep: libraptor2-0 (>= 2.0.14)

bibliothèque Raptor 2 pour la syntaxe RDF
dep: libssw0 (>= 1.1)

fast SIMD parallelized implementation of the Smith-Waterman algorithm
dep: libstdc++6 (>= 9)

bibliothèque standard C++ de GNU v3
dep: libtabixpp0 (>= 1.0.0)

C++ wrapper to tabix indexer
dep: libvcflib1 (>= 1.0.2+dfsg)

C++ library for parsing and manipulating VCF files
dep: zlib1g (>= 1:1.1.4)

Bibliothèque de compression - binaires

Télécharger vg

Télécharger pour toutes les architectures proposées
Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	1.30.0+ds-1+b1	47 834,9 ko	175 874,0 ko	[liste des fichiers]
mips64el	1.30.0+ds-1+b1	6 338,0 ko	33 290,0 ko	[liste des fichiers]