[ 原始碼： spades ]
套件：spades（3.13.1+dfsg-2 以及其他的）
spades 的相關連結
Debian 的資源：
下載原始碼套件 spades：
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Andreas Tille (QA 頁面)
- Sascha Steinbiss (QA 頁面)
- Michael R. Crusoe (QA 頁面)
- Alexandre Mestiashvili (QA 頁面)
外部的資源：
- 主頁 [cab.spbu.ru]
相似套件：
genome assembler for single-cell and isolates data sets
The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.
其他與 spades 有關的套件
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- dep: bamtools
- toolkit for manipulating BAM (genome alignment) files
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- dep: bwa
- Burrows-Wheeler Aligner
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- dep: libc6 (>= 2.29)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 4.0)
- GCC 支援函式庫
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libhat-trie0
- HAT-trie, an extremely efficient (space and time) modern variant of tries
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- dep: libnlopt0 (>= 2.6.1)
- nonlinear optimization library
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- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-distutils
- distutils package for Python 3.x
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- dep: python3-joblib
- tools to provide lightweight pipelining in Python
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- dep: python3-yaml
- YAML parser and emitter for Python3
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.2.3.3)
- 壓縮函式庫 - 跑程式時用(runtime)