Пакет: spades (3.13.1+dfsg-2 и други)

Връзки за spades

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Изтегляне на пакет-източник spades.

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Външни препратки:

Начална страница [cab.spbu.ru]

Подобни пакети:

genome assembler for single-cell and isolates data sets

The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.

Етикети: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Implemented in: Питон, User Interface: interface::commandline, role::program, Scope: Utility, Works with: works-with::biological-sequence, works-with::file

Други пакети, свързани с spades

зависимости

препоръчани

предложени

enhances

dep: bamtools

toolkit for manipulating BAM (genome alignment) files
dep: bwa

Burrows-Wheeler Aligner
dep: libc6 (>= 2.29)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: libgcc-s1 (>= 4.0)

GCC support library
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libhat-trie0

HAT-trie, an extremely efficient (space and time) modern variant of tries
dep: libnlopt0 (>= 2.6.1)

nonlinear optimization library
dep: libssw0 (>= 1.1)

fast SIMD parallelized implementation of the Smith-Waterman algorithm
dep: libstdc++6 (>= 9)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-distutils

distutils package for Python 3.x
dep: python3-joblib

tools to provide lightweight pipelining in Python
dep: python3-yaml

YAML parser and emitter for Python3
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: zlib1g (>= 1:1.2.3.3)

compression library - runtime

Изтегляне на spades

Изтегляне за всички налични архитектури
Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
amd64	3.13.1+dfsg-2+b2	4 664,7 кБ	22 622,0 кБ	[списък на файловете]