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[ 原始碼: kraken  ]

套件:kraken(1.1.1-2)

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assigning taxonomic labels to short DNA sequences

Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.

In its fastest mode of operation, for a simulated metagenome of 100 bp reads, Kraken processed over 4 million reads per minute on a single core, over 900 times faster than Megablast and over 11 times faster than the abundance estimation program MetaPhlAn. Kraken's accuracy is comparable with Megablast, with slightly lower sensitivity and very high precision.

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硬體架構 套件大小 安裝後大小 檔案
amd64 736。7 kB1,532。0 kB [檔案列表]
arm64 730。6 kB1,492。0 kB [檔案列表]
armel 728。6 kB1,462。0 kB [檔案列表]
armhf 729。8 kB1,418。0 kB [檔案列表]
i386 743。1 kB1,542。0 kB [檔案列表]
mips64el 737。3 kB1,558。0 kB [檔案列表]
ppc64el 736。7 kB1,772。0 kB [檔案列表]
s390x 730。5 kB1,508。0 kB [檔案列表]