Pakiet: kraken (1.1.1-2)
Odnośniki dla kraken
Zasoby systemu Debian:
- Raporty o błędach
- Developer Information
- Dziennik zmian w systemie Debian
- Informacje nt. praw autorskich
- Śledzenie łatek systemu Debian
Pobieranie pakietu źródłowego kraken:
Opiekunowie:
Zasoby zewnętrzne:
- Strona internetowa [ccb.jhu.edu]
Podobne pakiety:
assigning taxonomic labels to short DNA sequences
Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.
In its fastest mode of operation, for a simulated metagenome of 100 bp reads, Kraken processed over 4 million reads per minute on a single core, over 900 times faster than Megablast and over 11 times faster than the abundance estimation program MetaPhlAn. Kraken's accuracy is comparable with Megablast, with slightly lower sensitivity and very high precision.
Inne pakiety związane z kraken
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- dep: jellyfish1
- count k-mers in DNA sequences
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- dep: libc6 (>= 2.14) [amd64]
- Biblioteka GNU C: biblioteki współdzielone
również pakiet wirtualny udostępniany przez libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.7) [nie amd64, arm64, ppc64el]
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- dep: libgcc-s1 (>= 3.0) [nie armel, armhf, i386]
- Biblioteka wspomagająca GCC
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386]
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- dep: libgomp1 (>= 6)
- Biblioteka wspierająca GCC OpenMP (GOMP)
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- dep: libstdc++6 (>= 5.2)
- Standardowa biblioteka GNU C++, wersja 3
Pobieranie kraken
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| amd64 | 736,7 KiB | 1 532,0 KiB | [lista plików] |
| arm64 | 730,6 KiB | 1 492,0 KiB | [lista plików] |
| armel | 728,6 KiB | 1 462,0 KiB | [lista plików] |
| armhf | 729,8 KiB | 1 418,0 KiB | [lista plików] |
| i386 | 743,1 KiB | 1 542,0 KiB | [lista plików] |
| mips64el | 737,3 KiB | 1 558,0 KiB | [lista plików] |
| ppc64el | 736,7 KiB | 1 772,0 KiB | [lista plików] |
| s390x | 730,5 KiB | 1 508,0 KiB | [lista plików] |