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[ 原始碼: jellyfish  ]

套件:jellyfish(2.3.0-10)

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count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

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硬體架構 套件大小 安裝後大小 檔案
amd64 771。0 kB2,485。0 kB [檔案列表]
arm64 688。8 kB2,297。0 kB [檔案列表]
armel 639。3 kB1,847。0 kB [檔案列表]
armhf 664。7 kB1,435。0 kB [檔案列表]
i386 750。8 kB2,251。0 kB [檔案列表]
mips64el 651。8 kB2,991。0 kB [檔案列表]
ppc64el 739。1 kB2,957。0 kB [檔案列表]